GEO DataSets

(Submitter supplied) Human formalin-fixed paraffin-embedded breast tumor tissue (1-4 1.5mm punches) was processed to RNA using High Pure RNA Paraffin Kit (Roche Applied Science, Indianapolis, IN) for quantitative reverse transcription polymerase chain reaction (qRT-PCR).

Organism:

Homo sapiens

Type:

Expression profiling by RT-PCR

Platform:

GPL24747

246 Samples

Download data: TXT

(Submitter supplied) We compared expression of 105 breast cancer-related genes between matched primary and metastatic breast cancer

Organism:

Homo sapiens

Type:

Other

Platform:

GPL17071

246 Samples

Download data: TXT

(Submitter supplied) The nCounter miRGE™ assay was used to quantify transcript expression with a custom codeset containing probes for 123 endogenous mRNAs and 25 miRNAs to assess the association of genomic markers with long-term breast cancer survival. A total of 1,253 FFPE primary breast cancer samples with high-quality reads were obtained.

Organism:

Homo sapiens

Type:

Other

Platform:

GPL28286

1253 Samples

Download data: RCC, TXT

(Submitter supplied) Five molecular subtypes have been identified according to intrinsic genes transcription. Microarrays have been adopted for molecular subtyping in addition to the original NanoString nCounter assay. This study aimed to evaluate subtyping consistency among Taiwanese breast cancers. Our study showed that fundamental discrepancy exists between distinct gene expression measuring approaches, and cross platform equivalence should not be overemphasized with too much extrapolation.

Organism:

Homo sapiens

Type:

Expression profiling by array

Platform:

GPL570

133 Samples

Download data: CEL

(Submitter supplied) Microcalcification is one of the most common radiological and pathological features of breast ductal carcinoma in situ (DCIS), and to a lesser extent, invasive ductal carcinoma. We evaluated transcriptional profiles associated with ectopic mammary mineralization. We evaluated the transcriptional profiles associated with breast cancer microcalcification for Taiwanese breast cancer and a gene expression signature was derived.

Organism:

Homo sapiens

Type:

Expression profiling by array

Platform:

GPL570

109 Samples

Download data: CEL

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Homo sapiens

Type:

Expression profiling by array; Genome variation profiling by array

Platforms:

GPL570 GPL9075

104 Samples

Download data: CEL, TXT

(Submitter supplied) The interplay between copy number variation (CNV) and differential gene expression may be able to shed light on molecular process underlying breast cancer and lead to the discovery of cancer-related genes. In the current study, genes concurrently identified in array comparative genomic hybridization (CGH) and gene expression microarrays were used to derive gene signatures for Han Chinese breast cancers. more...

Organism:

Homo sapiens

Type:

Expression profiling by array

Platform:

GPL570

81 Samples

Download data: CEL

(Submitter supplied) The interplay between copy number variation (CNV) and differential gene expression may be able to shed light on molecular process underlying breast cancer and lead to the discovery of cancer-related genes. In the current study, genes concurrently identified in array comparative genomic hybridization (CGH) and gene expression microarrays were used to derive gene signatures for Han Chinese breast cancers. more...

Organism:

Homo sapiens

Type:

Genome variation profiling by array

Platform:

GPL9075

23 Samples

Download data: TXT

(Submitter supplied) Gene expression data from the Nurses' Health Study

Organism:

Homo sapiens

Type:

Expression profiling by high throughput sequencing; Third-party reanalysis

Platforms:

GPL22920 GPL17585

1577 Samples

Download data: CEL, CSV, TXT

(Submitter supplied) Clinically annotated GEPs of 366 primary resected breast tumors ranked by a 12 gene chemokine score

Organism:

Homo sapiens

Type:

Expression profiling by array

Platform:

GPL15048

366 Samples

Download data: CEL

(Submitter supplied) In this study, we profiled gene expressions on 20 biopsy tissues of early stage breast carcinoma using Applied Biosystem’s Human Genome Survey Microarrays. Two main previously defined clinically relevant subtypes of breast tumors, Luminal A (longest survival time) and Basal (shortest survival time) were identified. Statistical analysis identified 1210 genes as signature genes characterizing the two subtypes of breast cancer. more...

Organism:

Homo sapiens

Type:

Expression profiling by array

Platforms:

GPL1843 GPL1426 GPL1708

80 Samples

Download data

(Submitter supplied) Genome-wide gene expression changes were determined in histopathologically normal breast tissue in 33 women undergoing mastectomy for stage II and III primary invasive ductal carcinoma at serial distances in three dimensions from the tumor. Gene expression was determined by genome-wide mRNA analysis and subjected to metagene mRNA characterization

Organism:

Homo sapiens

Type:

Expression profiling by array

Platform:

GPL570

108 Samples

Download data: CEL

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Homo sapiens

Type:

Other

Platform:

GPL28371

2497 Samples

Download data: RCC

(Submitter supplied) Transcription profiling by NanoString nCounter of primary breast tumors from 1219 patients from the Carolina Breast Cancer Study (CBCS) using the NanoString nCounter platform and normalized with a RUVSeq-based iterative framework. The NanoString RNA counting assay for formalin-fixed paraffin embedded samples is unique in its sensitivity, technical reproducibility, and robustness for analysis of clinical and archival samples. more...

Organism:

Homo sapiens

Type:

Other

Platform:

GPL28371

1219 Samples

Download data: RCC

(Submitter supplied) Transcription profiling by NanoString nCounter of primary breast tumors from 1219 patients from the Carolina Breast Cancer Study (CBCS) using the NanoString nCounter platform and normalized with NanoString nSolver software. The NanoString RNA counting assay for formalin-fixed paraffin embedded samples is unique in its sensitivity, technical reproducibility, and robustness for analysis of clinical and archival samples. more...

Organism:

Homo sapiens

Type:

Other

Platform:

GPL28371

1278 Samples

Download data: RCC