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    1810010H24Rik RIKEN cDNA 1810010H24 gene [ Mus musculus (house mouse) ]

    Gene ID: 69066, updated on 27-Nov-2024

    Summary

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    Official Symbol
    1810010H24Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1810010H24 geneprovided by MGI
    Primary source
    MGI:MGI:1916316
    See related
    Ensembl:ENSMUSG00000078607 AllianceGenome:MGI:1916316
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in diencephalon lateral wall ventricular layer; medulla oblongata basal plate ventricular layer; olfactory epithelium; pons ventricular layer; and spinal cord ventricular layer. Orthologous to human C17orf58 (chromosome 17 open reading frame 58). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in lung adult (RPKM 14.0), liver E18 (RPKM 5.7) and 17 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 1810010H24Rik in Genome Data Viewer
    Location:
    11 E1; 11 70.1 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (106913499..106921269)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (107023269..107030443)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4007 Neighboring gene predicted gene, 39424 Neighboring gene mediator of cell motility 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_30953 Neighboring gene nuclear encoded tRNA arginine 1 (anticodon CCG) Neighboring gene STARR-positive B cell enhancer ABC_E9377 Neighboring gene STARR-positive B cell enhancer mm9_chr11:106905708-106906009 Neighboring gene bromodomain PHD finger transcription factor Neighboring gene STARR-positive B cell enhancer ABC_E2373 Neighboring gene STARR-positive B cell enhancer ABC_E5290 Neighboring gene STARR-positive B cell enhancer ABC_E10725 Neighboring gene STARR-seq mESC enhancer starr_30956 Neighboring gene STARR-positive B cell enhancer ABC_E10726 Neighboring gene STARR-seq mESC enhancer starr_30959 Neighboring gene STARR-seq mESC enhancer starr_30962 Neighboring gene predicted gene 11715 Neighboring gene nucleolar protein 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC123578

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    UPF0450 protein C17orf58 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163473.2 → NP_001156945.2  UPF0450 protein C17orf58 homolog isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AL596116
      Consensus CDS
      CCDS83916.1
      Conserved Domains (2) summary
      PHA03247
      Location:27 → 167
      PHA03247; large tegument protein UL36; Provisional
      cl02512
      Location:154 → 284
      NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

    2. NM_001372502.1 → NP_001359431.1  UPF0450 protein C17orf58 homolog isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AL596116
      UniProtKB/Swiss-Prot
      A0A1B0GR98, Q08AU9
      Related
      ENSMUSP00000147434.2, ENSMUST00000140447.4
      Conserved Domains (2) summary
      PHA03247
      Location:27 → 167
      PHA03247; large tegument protein UL36; Provisional
      cl02512
      Location:154 → 283
      NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

    3. NM_001372503.1 → NP_001359432.1  UPF0450 protein C17orf58 homolog isoform 3 precursor

      Status: VALIDATED

      Source sequence(s)
      AL596116
      Conserved Domains (2) summary
      PHA03247
      Location:27 → 167
      PHA03247; large tegument protein UL36; Provisional
      cl02512
      Location:154 → 244
      NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

    4. NM_001372504.1 → NP_001359433.1  UPF0450 protein C17orf58 homolog isoform 4 precursor

      Status: VALIDATED

      Source sequence(s)
      AL596116
      Conserved Domains (2) summary
      PHA03247
      Location:27 → 167
      PHA03247; large tegument protein UL36; Provisional
      cl02512
      Location:154 → 243
      NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      106913499..106921269
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036156944.1 → XP_036012837.1  UPF0450 protein C17orf58 homolog isoform X1

      Conserved Domains (2) summary
      PHA03247
      Location:95 → 264
      PHA03247; large tegument protein UL36; Provisional
      cl02512
      Location:251 → 432
      NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

    2. XM_017314738.3 → XP_017170227.2  UPF0450 protein C17orf58 homolog isoform X5

      Conserved Domains (3) summary
      PHA03307
      Location:21 → 221
      PHA03307; transcriptional regulator ICP4; Provisional
      PRK12323
      Location:132 → 250
      PRK12323; DNA polymerase III subunit gamma/tau
      cl02512
      Location:233 → 323
      NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

    3. XM_036156946.1 → XP_036012839.1  UPF0450 protein C17orf58 homolog isoform X3

      Conserved Domains (2) summary
      PHA03247
      Location:95 → 246
      PHA03247; large tegument protein UL36; Provisional
      cl02512
      Location:233 → 414
      NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

    4. XM_036156945.1 → XP_036012838.1  UPF0450 protein C17orf58 homolog isoform X2

      Conserved Domains (2) summary
      PHA03247
      Location:95 → 264
      PHA03247; large tegument protein UL36; Provisional
      cl02512
      Location:251 → 431
      NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

    5. XM_036156949.1 → XP_036012842.1  UPF0450 protein C17orf58 homolog isoform X8

      Conserved Domains (2) summary
      PHA03247
      Location:45 → 167
      PHA03247; large tegument protein UL36; Provisional
      cl02512
      Location:172 → 353
      NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

    6. XM_017314735.2 → XP_017170224.1  UPF0450 protein C17orf58 homolog isoform X6

      Conserved Domains (2) summary
      PHA03247
      Location:27 → 167
      PHA03247; large tegument protein UL36; Provisional
      cl02512
      Location:154 → 243
      NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

    7. XM_036156947.1 → XP_036012840.1  UPF0450 protein C17orf58 homolog isoform X4

      Conserved Domains (2) summary
      PHA03247
      Location:27 → 167
      PHA03247; large tegument protein UL36; Provisional
      cl02512
      Location:154 → 334
      NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

    8. XM_036156948.1 → XP_036012841.1  UPF0450 protein C17orf58 homolog isoform X7

      Conserved Domains (2) summary
      PHA03247
      Location:46 → 197
      PHA03247; large tegument protein UL36; Provisional
      cl02512
      Location:184 → 364
      NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

    9. XM_036156950.1 → XP_036012843.1  UPF0450 protein C17orf58 homolog isoform X9

      Conserved Domains (2) summary
      PHA03247
      Location:2 → 131
      PHA03247; large tegument protein UL36; Provisional
      cl02512
      Location:136 → 317
      NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q08AU9.2 GenPept UniProtKB/Swiss-Prot:Q08AU9

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