NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL10384 Query DataSets for GPL10384
Status Public on May 06, 2010
Title Agilent-021828 Unrestricted Mouse miRNA Microarray (V2) (Feature Number version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Mouse miRNA Microarray 2.0

Arrays of this design have barcodes that begin with 16021828 or 2521828.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL13493.
 
Submission date May 05, 2010
Last update date Jul 14, 2015
Organization Agilent Technologies
E-mail(s) [email protected]
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (115) GSM542910, GSM542911, GSM542912, GSM542913, GSM542914, GSM542915 
Series (21)
GSE21798 Control of oligodendroglial cell number by the miR-17~92 family of miRNA cluster (miRNA Agilent Part)
GSE21801 Control of oligodendroglial cell number by the miR-17~92 family of miRNA cluster
GSE22023 Ablation of Dicer from murine Schwann cells increases their proliferation while blocking myelination
Relations
Alternative to GPL13493
Alternative to GPL20689

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
PROBE_ID Spot identifier
CONTROL_TYPE Control type
miRNA_ID miRNA identifier
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SPOT_ID

Data table
ID COL ROW PROBE_ID CONTROL_TYPE miRNA_ID GENE_SYMBOL ACCESSION_STRING CHROMOSOMAL_LOCATION SPOT_ID
1 96 164 miRNABrightCorner30 pos --miRNABrightCorner30
2 96 162 DarkCorner pos --DarkCorner
3 96 160 A_54_P2696 FALSE mmu-miR-384-5p mmu-miR-384-5p mir|mmu-miR-384-5p|mir|MIMAT0004745 chrX:102539658-102539641
4 96 158 A_54_P2601 FALSE mmu-miR-32 mmu-miR-32 mir|mmu-miR-32|mir|MIMAT0000654 chr4:56908127-56908110
5 96 156 A_54_P2763 FALSE mmu-miR-466a-5p mmu-miR-466a-5p mir|mmu-miR-466a-5p|mir|MIMAT0004759|mir|mmu-miR-466e-5p|mir|MIMAT0004879 chr2:010398271-010398289,chr2:010400729-010400747,chr2:010429558-010429576
6 96 154 A_54_P2336 FALSE mmu-miR-155 mmu-miR-155 mir|mmu-miR-155|mir|MIMAT0000165 chr16:84714395-84714410
7 96 152 A_54_P2473 FALSE mmu-let-7f mmu-let-7f mir|mmu-let-7f|mir|MIMAT0000525 chr13:048633226-048633207,chrX:148346898-148346917
8 96 150 NA ignore --NA
9 96 148 A_54_P00004425 FALSE mmu-miR-669k mmu-miR-669k mir|mmu-miR-669k|mir|MIMAT0005831 chr2:10396995-10397011
10 96 146 A_54_P3623 FALSE mmu-miR-488* mmu-miR-488* mir|mmu-miR-488*|mir|MIMAT0003449 chr1:160435785-160435802
11 96 144 A_54_P2931 FALSE mmu-miR-297a* mmu-miR-297a* mir|mmu-miR-297a*|mir|MIMAT0004864|mir|mmu-miR-297b-3p|mir|MIMAT0004827|mir|mmu-miR-297c*|mir|MIMAT0004866 chr2:010430697-010430713,chr2:010433355-010433371,chr2:010437501-010437517,chr2:010438748-010438764
12 96 142 A_54_P3605 FALSE mmu-miR-503* mmu-miR-503* mir|mmu-miR-503*|mir|MIMAT0004790 chrX:50407228-50407220
13 96 140 A_54_P00004584 FALSE mmu-miR-1897-5p mmu-miR-1897-5p mir|mmu-miR-1897-5p|mir|MIMAT0007864 chr3:34537405-34537417
14 96 138 A_54_P3617 FALSE mmu-miR-374* mmu-miR-374* mir|mmu-miR-374*|mir|MIMAT0003728 chrX:100768478-100768461
15 96 136 A_54_P00004445 FALSE mmu-miR-669h-5p mmu-miR-669h-5p mir|mmu-miR-669h-5p|mir|MIMAT0005841 chr2:10439808-10439824
16 96 134 A_54_P3729 FALSE mmu-miR-30e mmu-miR-30e mir|mmu-miR-30e|mir|MIMAT0000248 chr4:120445248-120445233
17 96 132 NA ignore --NA
18 96 130 A_54_P2833 FALSE mmu-miR-369-3p mmu-miR-369-3p mir|mmu-miR-369-3p|mir|MIMAT0003186 chr12:110981677-110981696
19 96 128 A_54_P00004435 FALSE mmu-miR-1186 mmu-miR-1186 mir|mmu-miR-1186|mir|MIMAT0005836 chr8:32213434-32213418
20 96 126 A_54_P2057 FALSE mmu-miR-699_v12.0 mmu-miR-699_v12.0 mir|mmu-miR-699_v12.0|mir|MIMAT0003489 chr4:43505749-43505741

Total number of rows: 15744

Table truncated, full table size 1609 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap