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Status
Public on Jan 24, 2011
Title
Agilent-023647 B. taurus (Bovine) Oligo Microarray v2 (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Bos taurus Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
B. taurus (Bovine) Oligo Microarray v2
Submission date
Jan 24, 2011
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
[email protected] Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (324)
GSM832716 , GSM832717 , GSM832718 , GSM832719 , GSM832720 , GSM832721
GSM832722 ,
GSM832723 ,
GSM840531 ,
GSM840532 ,
GSM840533 ,
GSM840534 ,
GSM840535 ,
GSM840536 ,
GSM840537 ,
GSM840538 ,
GSM840539 ,
GSM840540 ,
GSM840541 ,
GSM840542 ,
GSM840630 ,
GSM840631 ,
GSM840632 ,
GSM840633 ,
GSM840634 ,
GSM840635 ,
GSM840636 ,
GSM840637 ,
GSM840638 ,
GSM840639 ,
GSM840640 ,
GSM840641 ,
GSM840642 ,
GSM840643 ,
GSM840644 ,
GSM840645 ,
GSM1259130 ,
GSM1259131 ,
GSM1259132 ,
GSM1259133 ,
GSM1259134 ,
GSM1259135 ,
GSM1259136 ,
GSM1259137 ,
GSM1259138 ,
GSM1259139 ,
GSM1259140 ,
GSM1259141 ,
GSM1259142 ,
GSM1259143 ,
GSM1259144 ,
GSM1259145 ,
GSM1259146 ,
GSM1259147 ,
GSM1259148 ,
GSM1259149 ,
GSM1259150 ,
GSM1259151 ,
GSM1259152 ,
GSM1259153 ,
GSM1259154 ,
GSM1259155 ,
GSM1259156 ,
GSM1259157 ,
GSM1259158 ,
GSM1259159 ,
GSM1259160 ,
GSM1259161 ,
GSM1259162 ,
GSM1259163 ,
GSM1259164 ,
GSM1259165 ,
GSM1259166 ,
GSM1259167 ,
GSM1259168 ,
GSM1259169 ,
GSM1259170 ,
GSM1259171 ,
GSM1259172 ,
GSM1259173 ,
GSM1259174 ,
GSM1259175 ,
GSM1259176 ,
GSM1259177 ,
GSM1259178 ,
GSM1259179 ,
GSM1259180 ,
GSM1259181 ,
GSM1259182 ,
GSM1259183 ,
GSM1259184 ,
GSM1259185 ,
GSM1259186 ,
GSM1259187 ,
GSM1259188 ,
GSM1259189 ,
GSM1259190 ,
GSM1259191 ,
GSM1259192 ,
GSM1259193 ,
GSM1403926 ,
GSM1403927 ,
GSM1403928 ,
GSM1403929 ,
GSM1403930 ,
GSM1403931 ,
GSM1403932 ,
GSM1403933 ,
GSM1403934 ,
GSM1403935 ,
GSM1403936 ,
GSM1403937 ,
GSM1403938 ,
GSM1403939 ,
GSM1403940 ,
GSM1403941 ,
GSM2051631 ,
GSM2051632 ,
GSM2051633 ,
GSM2051634 ,
GSM2051635 ,
GSM2051636 ,
GSM2051637 ,
GSM2051638 ,
GSM2051639 ,
GSM2051640 ,
GSM2051641 ,
GSM2051642 ,
GSM2051643 ,
GSM2051644 ,
GSM2051645 ,
GSM2051646 ,
GSM2051647 ,
GSM2051648 ,
GSM2051649 ,
GSM2051650 ,
GSM2051651 ,
GSM2051652 ,
GSM2051653 ,
GSM2051654 ,
GSM2051655 ,
GSM2152163 ,
GSM2152164 ,
GSM2152165 ,
GSM2152166 ,
GSM2152167 ,
GSM2152168 ,
GSM2152169 ,
GSM2152170 ,
GSM2178531 ,
GSM2178532 ,
GSM2178533 ,
GSM2178534 ,
GSM2178535 ,
GSM2178536 ,
GSM2178537 ,
GSM2178538 ,
GSM2178539 ,
GSM2178540 ,
GSM2178541 ,
GSM2178542 ,
GSM2178543 ,
GSM2178544 ,
GSM2178545 ,
GSM2178546 ,
GSM2178547 ,
GSM2178548 ,
GSM2178549 ,
GSM2178550 ,
GSM2178551 ,
GSM2178552 ,
GSM2178553 ,
GSM2178554 ,
GSM2178555 ,
GSM2178556 ,
GSM2178557 ,
GSM2178558 ,
GSM2178559 ,
GSM2178560 ,
GSM2178561 ,
GSM2178562 ,
GSM2178563 ,
GSM2178564 ,
GSM2178565 ,
GSM2178566 ,
GSM2178567 ,
GSM2178568 ,
GSM2178569 ,
GSM2178570 ,
GSM2178571 ,
GSM2178572 ,
GSM2178573 ,
GSM2178574 ,
GSM2178575 ,
GSM2178576 ,
GSM2178577 ,
GSM2178578 ,
GSM2386811 ,
GSM2386812 ,
GSM2386813 ,
GSM2386814 ,
GSM2386815 ,
GSM2386816 ,
GSM2386817 ,
GSM2386818 ,
GSM2386819 ,
GSM2386820 ,
GSM2386821 ,
GSM2386822 ,
GSM2386823 ,
GSM2386824 ,
GSM2386825 ,
GSM2386826 ,
GSM2386827 ,
GSM2386828 ,
GSM2386829 ,
GSM2386830 ,
GSM2386831 ,
GSM2386832 ,
GSM2386833 ,
GSM2386834 ,
GSM2494616 ,
GSM2494619 ,
GSM2494621 ,
GSM2494623 ,
GSM2494625 ,
GSM2494627 ,
GSM2494629 ,
GSM2494631 ,
GSM2494708 ,
GSM2494709 ,
GSM2494710 ,
GSM2494711 ,
GSM2494712 ,
GSM2494713 ,
GSM2494714 ,
GSM2494715 ,
GSM2521486 ,
GSM2521487 ,
GSM2521488 ,
GSM2521489 ,
GSM2521490 ,
GSM2521491 ,
GSM2521492 ,
GSM2521493 ,
GSM3161863 ,
GSM3161864 ,
GSM3161865 ,
GSM3161866 ,
GSM3161867 ,
GSM3161868 ,
GSM3161869 ,
GSM3161870 ,
GSM3161871 ,
GSM3161872 ,
GSM3161873 ,
GSM3161874 ,
GSM3717820 ,
GSM3717821 ,
GSM3717822 ,
GSM3717823 ,
GSM3717824 ,
GSM3717825 ,
GSM3717826 ,
GSM3717827 ,
GSM4081785 ,
GSM4081786 ,
GSM4081787 ,
GSM4081788 ,
GSM4144695 ,
GSM4144696 ,
GSM4144697 ,
GSM4144698 ,
GSM4448861 ,
GSM4448862 ,
GSM4448863 ,
GSM4448864 ,
GSM4448865 ,
GSM4448866 ,
GSM4448867 ,
GSM4448868 ,
GSM4448869 ,
GSM4448870 ,
GSM4448871 ,
GSM4448872 ,
GSM4448873 ,
GSM4448874 ,
GSM4448875 ,
GSM4448876 ,
GSM4448877 ,
GSM4448878 ,
GSM4448879 ,
GSM4448880 ,
GSM4448881 ,
GSM4448882 ,
GSM4448883 ,
GSM4448884 ,
GSM4448885 ,
GSM4448886 ,
GSM4448887 ,
GSM4826323 ,
GSM4826324 ,
GSM4826325 ,
GSM4826326 ,
GSM4826327 ,
GSM4826328 ,
GSM4826329 ,
GSM4826330 ,
GSM4826331 ,
GSM4826332 ,
GSM4826333 ,
GSM4826334 ,
GSM8146272 ,
GSM8146273 ,
GSM8146274 ,
GSM8146275 ,
GSM8146276 ,
GSM8146277 ,
GSM8146278 ,
GSM8146279 ,
GSM8146280 ,
GSM8146281 ,
GSM8146282 ,
GSM8146283 Series (19)
GSE33680 Comparing gene expression profiles in the mammary glands of high- and low-milk-yield Holstein Friesian cows
GSE34021 Comparison and analysis of gene expression between cattle and buffalo after infection with schistosoma japonicum
GSE34031 Gene expression profilling in bovine mammary gland pathophysiology
GSE52085 Liver functional genomics in beef cows on grazing systems
GSE58216 Transcriptional profile of bovine chorioallantoic membrane explants in response to wild type, ΔvirB2 or ΔbtpB Brucella abortus
GSE77421 Microarray analysis of liver and mammary gland biopsies of dairy cows supplemented with vitamins B9 and B12 alone or in combination
GSE81419 Genome-wide transcriptional profiling of peripheral blood mononuclear cells challenged with Theileria annulata in crossbred and indigenous cattle of India
GSE81958 Prepartum body condition score and plane of nutrition affect the hepatic transcriptome during the transition period in grazing dairy cows
GSE89693 Selected tissues of two Polish goat breeds do not differ on genomic level
GSE95019 Analysis of influence of Excretory Secretory Products from wild and laboratory Fasciola hepatica isolates on bovine macrophages
GSE95022 Analysis of influence of Excretory Secretory Products from wild and laboratory Fasciola hepatica isolates on LPS activated bovine macrophages
GSE95677 Prepartal energy intake alters blood polymorphonuclear leukocyte transcriptome during the peripartal period in Holstein cows
GSE114975 Mammary Gland transcriptome modifications by nutrient restriction in early lactation Holstein cows challenged with intramammary lipopolysaccharide
GSE129639 Global gene expression analysis of neutrophils from Periparturient Holstein Cows
GSE137565 Transcriptomic profile of semitendinosus muscle of bulls of different breed and performance (Hereford vs Holstein-Friesian)
GSE139612 Transcriptomic Analysis of Inflammatory Responses in Bovine Mammary Epithelial Cells following Stimulation with Escherichia coli and Staphylococcus aureus
GSE147918 Cattle lymph nodes: Control vs. Larva tick-infested; Control vs. Adult tick-infested; Larva tick-infested vs. Adult tick-infested
GSE159302 Effects of restriction on mammary gland transcriptome
GSE261541 Liver transcriptome modifications by nutrient restriction in early lactation Holstein cows challenged with intramammary lipopolysaccharide
Relations Alternative to
GPL11649
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME NAME
PROBENAME CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID Spot identifier
Data table ID COL ROW NAME PROBENAME CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE SPOT_ID 1
266
170
GE_BrightCorner
GE_BrightCorner
pos
--GE_BrightCorner
2
266
168
DarkCorner
DarkCorner
pos
--DarkCorner
3
266
166
DarkCorner
DarkCorner
pos
--DarkCorner
4
266
164
DarkCorner
DarkCorner
pos
--DarkCorner
5
266
162
DarkCorner
DarkCorner
pos
--DarkCorner
6
266
160
DarkCorner
DarkCorner
pos
--DarkCorner
7
266
158
DarkCorner
DarkCorner
pos
--DarkCorner
8
266
156
DarkCorner
DarkCorner
pos
--DarkCorner
9
266
154
DarkCorner
DarkCorner
pos
--DarkCorner
10
266
152
DarkCorner
DarkCorner
pos
--DarkCorner
11
266
150
DarkCorner
DarkCorner
pos
--DarkCorner
12
266
148
A_73_112653
A_73_112653
FALSE
tc|TC354804
chr25:40490735-40490794
AF513718 E3 ubiquitin ligase {Homo sapiens} (exp=-1; wgp=0; cg=0), partial (55%) [TC354804]
TTTCTGGAAAATAAGCAGCAGCAGCAGCAGCATGCTATTTGCGTTTCTAAAGAGAAAACA
A_73_112653
13
266
146
A_73_P034336
A_73_P034336
FALSE
NM_001101187 NM_001101187 539174
MTMR9
myotubularin related protein 9
Bt.24521
ENSBTAT00000004852
ref|NM_001101187|ens|ENSBTAT00000004852|gb|BC151329|tc|TC364224
chr8:7875019-7874960
Bos taurus myotubularin related protein 9 (MTMR9), mRNA [NM_001101187]
GAATTCGTGTCCTCATTCTGGTTTGTCAAGAAAGCAAAAGCTGAATATTTATTCAAGGTA
14
266
144
A_73_100764
A_73_100764
FALSE
XM_002688967 XM_002688967 528149
CHSY3
chondroitin sulfate synthase 3
Bt.35627
gb|BC149796|gb|XM_606561|tc|TC350256|ref|XM_002688967
chr7:22599022-22598963
Bos taurus chondroitin sulfate synthase 3, mRNA (cDNA clone IMAGE:8472680), partial cds. [BC149796]
AGAAGCTTTATGAAACAATGTCCTTCATTTGCTGGCAAGAAGATAAAATATGACAGAACC
15
266
142
A_73_P063531
A_73_P063531
FALSE
XM_002697020 XM_002697020 505543
STAB1
stabilin 1
Bt.53716
ENSBTAT00000019663
ens|ENSBTAT00000019663|gb|XM_581841|ref|XM_002697020
chr22:49473375-49473316
PREDICTED: Bos taurus similar to stabilin 1 (STAB1), mRNA [XM_581841]
GO:0005488(binding)|GO:0005540(hyaluronic acid binding)|GO:0007155(cell adhesion)
ACACACAGAGGATCCTCGAGGTGAAGTGACGCAGAGGCACGAGGGAGACGGCTTTTATTG
16
266
140
A_73_P045581
A_73_P045581
FALSE
NM_001098123 NM_001098123 541056
GRM3
glutamate receptor, metabotropic 3
Bt.34265
ENSBTAT00000025275
ref|NM_001098123|ens|ENSBTAT00000025275|gb|BC140519|gb|BC149076
chr4:34710171-34710112
Bos taurus glutamate receptor, metabotropic 3 (GRM3), mRNA [NM_001098123]
ACAGGGTCAGTCTGTTAGAAAATATGGTGGCAATATTAGATAACCTTTTTTCCTATGAAG
17
266
138
A_73_P064131
A_73_P064131
FALSE
NM_001166492 NM_001166492 281062
CDH2
cadherin 2, type 1, N-cadherin (neuronal)
Bt.4417
ENSBTAT00000028238
ref|NM_001166492|ens|ENSBTAT00000028238|gb|X53615|tc|TC303991
chr24:29923716-29923775
Bos taurus cadherin 2, type 1, N-cadherin (neuronal) (CDH2), mRNA [NM_001166492]
GO:0005509(calcium ion binding)|GO:0005886(plasma membrane)|GO:0005911(cell-cell junction)|GO:0005912(adherens junction)|GO:0007155(cell adhesion)|GO:0007156(homophilic cell adhesion)|GO:0007157(heterophilic cell-cell adhesion)|GO:0016021(integral to membrane)|GO:0016339(calcium-dependent cell-cell adhesion)|GO:0016342(catenin complex)|GO:0016477(cell migration)|GO:0019903(protein phosphatase binding)|GO:0030027(lamellipodium)|GO:0042153(RPTP-like protein binding)|GO:0045202(synapse)|GO:0045294(alpha-catenin binding)|GO:0045295(gamma-catenin binding)|GO:0048514(blood vessel morphogenesis)
GATAAAGAACGCCAGGCCAAACAACTTTTAATTGATCCAGAAGATGATGTAAGAGATAAT
18
266
136
A_73_P030916
A_73_P030916
FALSE
NM_001015599 NM_001015599 514555
UBASH3A
ubiquitin associated and SH3 domain containing A
Bt.32461
ENSBTAT00000028358
ref|NM_001015599|ens|ENSBTAT00000028358|ens|ENSBTAT00000028356|gb|BT026529
chr1:145658651-145658710
Bos taurus ubiquitin associated and SH3 domain containing A (UBASH3A), mRNA [NM_001015599]
TCTCTGGGTATGTGCTTCTGCGAAGAAAACAAAGAGGAAGGAAAATGGGAGTTGGTGAAC
19
266
134
A_73_P088811
A_73_P088811
FALSE
XM_002686894 XM_002686894 514243
HECW1
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
Bt.25513
ENSBTAT00000028268
ens|ENSBTAT00000028268|gb|XM_592060|tc|TC305984|ref|XM_002686894
chr4:80310394-80310335
PREDICTED: Bos taurus similar to HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 (HECW1), mRNA [XM_592060]
GO:0005515(protein binding)|GO:0005622(intracellular)|GO:0006464(protein modification process)|GO:0016881(acid-amino acid ligase activity)
CATACCTCCATTACTAACAATGAAATATGAATGCAAGTTATGCTACACTTGACCAAATGG
20
266
132
A_73_P109491
A_73_P109491
FALSE
ENSBTAT00000054073
ens|ENSBTAT00000054073|ens|ENSBTAT00000055899|ens|ENSBTAT00000057342
unmapped
Bos taurus killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2 (KIR3DL2), mRNA. [Source:RefSeq DNA;Acc:NM_001098089] [ENSBTAT00000054073]
GAGCCCATTATTTATGAGGAATTCGGAATTCGATGTAAACCAAGACCATGCTGACCCTGA
A_73_P109491
45220 19926 Kbytes .Supplementary data files not provided
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