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Status
Public on Jan 24, 2011
Title
Agilent-023647 B. taurus (Bovine) Oligo Microarray v2 (Probe Name version)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Bos taurus Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL11648.
Submission date
Jan 24, 2011
Last update date
Jul 16, 2016
Organization
Agilent Technologies
E-mail(s)
[email protected] Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (570)
GSM660622 , GSM660623 , GSM660624 , GSM660625 , GSM660626 , GSM660627
GSM660628 ,
GSM660629 ,
GSM660630 ,
GSM660631 ,
GSM660632 ,
GSM660633 ,
GSM660634 ,
GSM660635 ,
GSM660636 ,
GSM660637 ,
GSM1016443 ,
GSM1016444 ,
GSM1016445 ,
GSM1016446 ,
GSM1016447 ,
GSM1016448 ,
GSM1016449 ,
GSM1016450 ,
GSM1016451 ,
GSM1016452 ,
GSM1016453 ,
GSM1016454 ,
GSM1160025 ,
GSM1160026 ,
GSM1160027 ,
GSM1160028 ,
GSM1264419 ,
GSM1264420 ,
GSM1264421 ,
GSM1298146 ,
GSM1298147 ,
GSM1324044 ,
GSM1324045 ,
GSM1324046 ,
GSM1324047 ,
GSM1324049 ,
GSM1324050 ,
GSM1324052 ,
GSM1324054 ,
GSM1324057 ,
GSM1324060 ,
GSM1324061 ,
GSM1324062 ,
GSM1324063 ,
GSM1324064 ,
GSM1324065 ,
GSM1324066 ,
GSM1324067 ,
GSM1324068 ,
GSM1324069 ,
GSM1324070 ,
GSM1324071 ,
GSM1324072 ,
GSM1324073 ,
GSM1324074 ,
GSM1419675 ,
GSM1419676 ,
GSM1419677 ,
GSM1419678 ,
GSM1419679 ,
GSM1419680 ,
GSM1419681 ,
GSM1419682 ,
GSM1419683 ,
GSM1419684 ,
GSM1419685 ,
GSM1419686 ,
GSM1419687 ,
GSM1419688 ,
GSM1419689 ,
GSM1419690 ,
GSM1419691 ,
GSM1419692 ,
GSM1419693 ,
GSM1419694 ,
GSM1419695 ,
GSM1419696 ,
GSM1419697 ,
GSM1419698 ,
GSM1429687 ,
GSM1429689 ,
GSM1429690 ,
GSM1429692 ,
GSM1489932 ,
GSM1489933 ,
GSM1489934 ,
GSM1489935 ,
GSM1489936 ,
GSM1489937 ,
GSM1489938 ,
GSM1489939 ,
GSM1489940 ,
GSM1489941 ,
GSM1489942 ,
GSM1489943 ,
GSM1489944 ,
GSM1489945 ,
GSM1489946 ,
GSM1489947 ,
GSM1489948 ,
GSM1489949 ,
GSM1489950 ,
GSM1489951 ,
GSM1489952 ,
GSM1493896 ,
GSM1493897 ,
GSM1493898 ,
GSM1493899 ,
GSM1493900 ,
GSM1493901 ,
GSM1493902 ,
GSM1493903 ,
GSM1493904 ,
GSM1493905 ,
GSM1493906 ,
GSM1493907 ,
GSM1493908 ,
GSM1493909 ,
GSM1493910 ,
GSM1493911 ,
GSM1493912 ,
GSM1493913 ,
GSM1493914 ,
GSM1493915 ,
GSM1493916 ,
GSM1493917 ,
GSM1493918 ,
GSM1493919 ,
GSM1493920 ,
GSM1493921 ,
GSM1493922 ,
GSM1493923 ,
GSM1493924 ,
GSM1493925 ,
GSM1493926 ,
GSM1493927 ,
GSM1493928 ,
GSM1493929 ,
GSM1493930 ,
GSM1493931 ,
GSM1493932 ,
GSM1493933 ,
GSM1493934 ,
GSM1493935 ,
GSM1493936 ,
GSM1493937 ,
GSM1493938 ,
GSM1493939 ,
GSM1493940 ,
GSM1493941 ,
GSM1493942 ,
GSM1517841 ,
GSM1517842 ,
GSM1534274 ,
GSM1534275 ,
GSM1534276 ,
GSM1534277 ,
GSM1534278 ,
GSM1534279 ,
GSM1534280 ,
GSM1534281 ,
GSM1534282 ,
GSM1534283 ,
GSM1534284 ,
GSM1534285 ,
GSM1534427 ,
GSM1534428 ,
GSM1600088 ,
GSM1600089 ,
GSM1600090 ,
GSM1600091 ,
GSM1600092 ,
GSM1600093 ,
GSM1600094 ,
GSM1600095 ,
GSM1600096 ,
GSM1600097 ,
GSM1600098 ,
GSM1600099 ,
GSM1600100 ,
GSM1600101 ,
GSM1600102 ,
GSM1600103 ,
GSM1600104 ,
GSM1600105 ,
GSM1600106 ,
GSM1600107 ,
GSM1600108 ,
GSM1600109 ,
GSM1600110 ,
GSM1600111 ,
GSM1600112 ,
GSM1600113 ,
GSM1600114 ,
GSM1600115 ,
GSM1600116 ,
GSM1600117 ,
GSM1627020 ,
GSM1627021 ,
GSM1627022 ,
GSM1627023 ,
GSM1627024 ,
GSM1627025 ,
GSM1641216 ,
GSM1641217 ,
GSM1716501 ,
GSM1716502 ,
GSM1716503 ,
GSM1716504 ,
GSM1716505 ,
GSM1716506 ,
GSM1716507 ,
GSM1716508 ,
GSM1716509 ,
GSM1716510 ,
GSM1716511 ,
GSM1716512 ,
GSM1907001 ,
GSM1907002 ,
GSM1907003 ,
GSM1907004 ,
GSM1907005 ,
GSM1907006 ,
GSM1907007 ,
GSM1907008 ,
GSM1907009 ,
GSM1907010 ,
GSM1907011 ,
GSM1907012 ,
GSM1907013 ,
GSM1907014 ,
GSM1907015 ,
GSM1907016 ,
GSM1907017 ,
GSM1907018 ,
GSM1907019 ,
GSM1907020 ,
GSM1946622 ,
GSM1946623 ,
GSM1946624 ,
GSM1946625 ,
GSM1946626 ,
GSM1946627 ,
GSM1946628 ,
GSM1946629 ,
GSM1949534 ,
GSM1949535 ,
GSM1949536 ,
GSM1949537 ,
GSM1949538 ,
GSM1949539 ,
GSM1949540 ,
GSM1949541 ,
GSM1949542 ,
GSM1949543 ,
GSM1949544 ,
GSM1949545 ,
GSM1949546 ,
GSM1949547 ,
GSM1949548 ,
GSM1949549 ,
GSM2237852 ,
GSM2237853 ,
GSM2237854 ,
GSM2237855 ,
GSM2237856 ,
GSM2237857 ,
GSM2237858 ,
GSM2237859 ,
GSM2354248 ,
GSM2354249 ,
GSM2354250 ,
GSM2354251 ,
GSM2354252 ,
GSM2354253 ,
GSM2354254 ,
GSM2354255 ,
GSM2434275 ,
GSM2434276 ,
GSM2434277 ,
GSM2434278 ,
GSM2434279 ,
GSM2434280 ,
GSM2434281 ,
GSM2434282 ,
GSM2877660 ,
GSM2877661 ,
GSM2877662 ,
GSM2877663 ,
GSM2877664 ,
GSM2877665 ,
GSM2877666 ,
GSM2877667 ,
GSM2877668 ,
GSM2877669 ,
GSM2877670 ,
GSM2877671 ,
GSM2877672 ,
GSM2877673 ,
GSM2877674 ,
GSM2877675 ,
GSM2877676 ,
GSM2877677 ,
GSM2877678 ,
GSM2877679 ,
GSM2877680 ,
GSM2877681 ,
GSM2877682 ,
GSM2877683 ,
GSM2877684 ,
GSM2877685 ,
GSM2877686 ,
GSM2877687 ,
GSM2877688 ,
GSM2877689 ,
GSM2877690 ,
GSM2995123 ,
GSM2995124 ,
GSM2995125 ,
GSM2995126 ,
GSM2995127 ,
GSM2995128 ,
GSM2995129 ,
GSM2995130 ,
GSM2995131 ,
GSM3262036 ,
GSM3262037 ,
GSM3262038 ,
GSM3262039 ,
GSM3262040 ,
GSM3262041 ,
GSM3262042 ,
GSM3262043 ,
GSM3262044 ,
GSM3262045 ,
GSM3262046 ,
GSM4030307 ,
GSM4030308 ,
GSM4030309 ,
GSM4030310 ,
GSM4030311 ,
GSM4030312 ,
GSM4030313 ,
GSM4030314 ,
GSM4064325 ,
GSM4064326 ,
GSM4064327 ,
GSM4064328 ,
GSM4064329 ,
GSM4064330 ,
GSM4064331 ,
GSM4064332 ,
GSM4064333 ,
GSM4064334 ,
GSM4064335 ,
GSM4064336 ,
GSM4064337 ,
GSM4064338 ,
GSM4064339 ,
GSM4064340 ,
GSM4064341 ,
GSM4064342 ,
GSM4064343 ,
GSM4064344 ,
GSM4064345 ,
GSM4064346 ,
GSM4064347 ,
GSM4064348 ,
GSM4064349 ,
GSM4064350 ,
GSM4064351 ,
GSM4064352 ,
GSM4064353 ,
GSM4064354 ,
GSM4064355 ,
GSM4064356 ,
GSM4064357 ,
GSM4064358 ,
GSM4064359 ,
GSM4064360 ,
GSM4064361 ,
GSM4064362 ,
GSM4064363 ,
GSM4064364 ,
GSM4064365 ,
GSM4064366 ,
GSM4064367 ,
GSM4064368 ,
GSM4064369 ,
GSM4064370 ,
GSM4064371 ,
GSM4064372 ,
GSM4064373 ,
GSM4064374 ,
GSM4064375 ,
GSM4064376 ,
GSM4064377 ,
GSM4064378 ,
GSM4064379 ,
GSM4064380 ,
GSM4064381 ,
GSM4064382 ,
GSM4064383 ,
GSM4064384 ,
GSM4064385 ,
GSM4064386 ,
GSM4064387 ,
GSM4064388 ,
GSM4064389 ,
GSM4064390 ,
GSM4064391 ,
GSM4064392 ,
GSM4064393 ,
GSM4064394 ,
GSM4064395 ,
GSM4064396 ,
GSM4064397 ,
GSM4064398 ,
GSM4064399 ,
GSM4064400 ,
GSM4064401 ,
GSM4064402 ,
GSM4064403 ,
GSM4064404 ,
GSM4064405 ,
GSM4064406 ,
GSM4064407 ,
GSM4064408 ,
GSM4064409 ,
GSM4064410 ,
GSM4064411 ,
GSM4064412 ,
GSM4064413 ,
GSM4064414 ,
GSM4064415 ,
GSM4064416 ,
GSM4064417 ,
GSM4064418 ,
GSM4064419 ,
GSM4064420 ,
GSM4932946 ,
GSM4932947 ,
GSM4932948 ,
GSM4932949 ,
GSM4932950 ,
GSM4932951 ,
GSM4932952 ,
GSM4932953 ,
GSM5022987 ,
GSM5022988 ,
GSM5022989 ,
GSM5022990 ,
GSM5022991 ,
GSM5022992 ,
GSM5022993 ,
GSM5022994 ,
GSM5022995 ,
GSM5022996 ,
GSM5022997 ,
GSM5022998 ,
GSM5022999 ,
GSM5023000 ,
GSM5023001 ,
GSM5023002 ,
GSM5023003 ,
GSM5023004 ,
GSM5023005 ,
GSM5023006 ,
GSM5023007 ,
GSM5023008 ,
GSM5023009 ,
GSM5023010 ,
GSM5023011 ,
GSM5023012 ,
GSM5023013 ,
GSM5023014 ,
GSM5023015 ,
GSM5023016 ,
GSM5023017 ,
GSM5023018 ,
GSM5023019 ,
GSM5023020 ,
GSM5023021 ,
GSM5023022 ,
GSM5023023 ,
GSM5023024 ,
GSM5024981 ,
GSM5024982 ,
GSM5024983 ,
GSM5024984 ,
GSM5024985 ,
GSM5024986 ,
GSM5024987 ,
GSM5024988 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (41)
GSE26842 Consequences of conceptus exposure to colony stimulating factor 2 on survival, elongation, interferon-{tau} secretion and gene expression
GSE41401 Responses of Monocytes derived macrophages from TB-infected and TB-free cattles to in vitro M.bovis challenge
GSE47816 Comparison of stem/progenitor cell number and transcriptomic profile in mammary tissue of dairy and beef breed heifers
GSE52388 IgMhigh vs IgMlow B cells from bovine leukemia virus-infected cattle
GSE53657 Bovine nose tissues: Yellow nose vs. Black nose
GSE54790 The transcriptomic profile of peripheral blood nuclear cells in bovine and cervine in peak lactation and dry period
GSE58794 Modulation of the immune system during postpartum uterine inflammation [expression]
GSE59166 Microarray analysis indicates that vitamin A alters expression profiles of bovine intramuscular preadipocytes during adipogenesis
GSE60832 Modulation of the immune system during postpartum uterine inflammation
GSE60844 Molecular regulation of enhanced muscle mass in developing Blond Aquitaine foetuses compared to Charolais
GSE60935 Longissimus cervicis muscle of beef steers with divergent Warner Bratzler Shear Force (WBSF) residuals following different post-mortem treatments (electrically stimulated v. non-stimulated)
GSE61977 Expression profiles of microRNA in bovine raw milk exosome and supernatant without exosome [mRNA array]
GSE61978 Expression profiles of microRNA in bovine raw milk exosome and supernatant without exosome
GSE62835 Transcriptional profiling of whole-blood in Mycobacterium avium subsp. paratuberculosis-infected cattle
GSE62845 Altered molecular expression of the TLR4/ NF-κB signaling pathway in mammary tissue of Chinese Holstein cattle with mastitis
GSE65560 Maternal Plane Of Nutrition During Late Gestation And Weaning Age Alter Offspring Transcriptome Profiles Of Longissimus Muscle In Angus × Simmental
GSE66651 Microarray analysis of the gene expression profile and lipid metabolism in fat-1 transgenic cattle
GSE67176 Gene Expression Profiling of Hormonal Regulation Related to the Residual Feed Intake of Holstein Cattle
GSE70059 Whole blood transcriptome analysis of Mycoplasma mycoides subsp, mycoides-infected cattle confirms immunosuppression but does not reflect local inflammation
GSE73980 Expression pattern of mRNA of liver and mammary in dairy cows fed two different level of forage/concentrate ration
GSE75239 Microarray analysis profiling of the effect of cowpea phenolic extract on gene expression in bovine peripheral blood in vitro
GSE75240 Global gene expression profiling of the effect of probiotics supplementation in dairy cows
GSE84486 Impact of heat stress on transcriptional adaptation of mammary epithelial cells in riverine buffalo (Bubalus bubalis)
GSE88912 Lung collapse and respiratory distress in neonatal cloned cows is caused by surfactant homeostasis disorders
GSE92672 Gene expression of bovine embryo derived stem-like cells (eSLCs)
GSE107741 Endometrial gene expression in fertile and subfertile cows
GSE107742 Gene expression in bovine endometrium at different period after parturition
GSE110517 Transcriptome profiles of the different expression genes in peripheral blood mononuclear cells (PBMCs) of calves infected with two different virulent Mycoplasma bovis strains
GSE116800 Transcriptome signature of local native cattle of Ladakh region from high altitude and Sahiwal cattle from low altitude (sea level).
GSE135795 Differential Gene Expression Profiling of PBMCs in Crossbred and Tharparkar Cows in Relation to Lameness
GSE136981 Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle
GSE162088 EEF1D RNAi in Bovine mammary epithelial cell
GSE164923 Changes in proportion of side population cells and gene expression in bovine endometrium after Intrauterine administration of povidone-iodine
GSE164924 Temporal changes of gene expression in bovine endometrium after parturition
GSE164925 Effect of senktide administration on the embryo collected from superovulated cows
GSE165039 Effect of intrauterine MGO administration on bovine endometrium
GSE166288 Transcriptome analysis of MDBK cells infected with cytopathic bovine viral diarrhea virus (BVDV)
GSE166528 Transcriptome analysis of MDBK cells infected with non-cytopathic field strains of bovine viral diarrhea virus (BVDV)
GSE176377 Differences in fetal longissimus muscle gene expression between low and high maternal nutrition
GSE191179 Differences in fetal liver gene expression between low and high maternal nutrition
GSE201438 Dynamic profiles of the Yak mammary transcriptome during lactation
Relations Alternative to
GPL11648
Data table header descriptions ID Agilent Probe Name
PROBENAME CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID Spot identifier
Data table ID PROBENAME CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE SPOT_ID A_73_100001
A_73_100001
FALSE
chr4:050536477-050536536
TGAACAATTCTTTATTCTGTTTTTTCATACTGTATTCACTAAATTAAGTAGCAACTCATT
A_73_100001
A_73_100002
A_73_100002
FALSE
XM_002686189 tc|TC332866
chr3:36784653-36784712
"Q2S3N1_SALRD (Q2S3N1) 6,7-dimethyl-8-ribityllumazine synthase (Riboflavin synthase) , partial (8%) [TC332866]"
TATTCGCTTCCTCTTAGGTTGCTGCTCTACATGGAGCTGTGACTAGACATGTTTTCAGTT
A_73_100007
A_73_100007
FALSE
XM_002694358 XM_002694358 519372
INTU
inturned planar cell polarity effector homolog (Drosophila)
Bt.62185
gb|XM_597589|ref|XM_002694358
chr17:31783439-31783380
"PREDICTED: Bos taurus similar to PDZ domain containing 6 (INTU), mRNA [XM_597589]"
GO:0005515(protein binding)
CTGTTTTCATGACTCAGTTACAGAAATTGCCATTGAAATGGCTTTTAAACTGTTCTTTGG
A_73_100008
A_73_100008
FALSE
CK974182 513513
CHI3L2
chitinase 3-like 2
Bt.103113
ENSBTAT00000018054
ens|ENSBTAT00000018054|gb|CK974182|tc|TC390943|tc|TC374336
chr3:34757163-34757104
"PREDICTED: Bos taurus misc_RNA (CHI3L2), miscRNA. [Source:RefSeq DNA;Acc:XR_042527] [ENSBTAT00000018054]"
TGGACATAAGTTGGATCTACCCAAATGTAAAAGACAACACTCATTTCACTGTGCTGATTC
A_73_100009
A_73_100009
FALSE
chr22:052315091-052315032
TGTGCAAGTTTCCTCCTGTAAGGACACCTCTAATCGGAAAGGCCATTTCCTTGGTATCAT
A_73_100009
A_73_100012
A_73_100012
FALSE
NM_001075389 NM_001075389 509064
C4H7ORF11
chromosome 7 open reading frame 11 ortholog
Bt.19653
ENSBTAT00000024911
ref|NM_001075389|ens|ENSBTAT00000024911|gb|BC120071|gb|DV790644
chr4:83856706-83856765
"Bos taurus chromosome 7 open reading frame 11 ortholog (C4H7ORF11), mRNA [NM_001075389]"
GAAAATAGACCATACTTTGTGCTGTAGACAGGTTTATATATTTGTTCATAGGGAAAAGGG
A_73_100014
A_73_100014
FALSE
NM_001031750 NM_001031750 281770
FOXL2
forkhead box L2
Bt.13033
ENSBTAT00000044307
ref|NM_001031750|ens|ENSBTAT00000044307|tc|TC302804
chr1:132094188-132094129
"Bos taurus forkhead box L2 (FOXL2), mRNA [NM_001031750]"
"GO:0001541(ovarian follicle development)|GO:0002074(extraocular skeletal muscle development)|GO:0003677(DNA binding)|GO:0003700(transcription factor activity)|GO:0005515(protein binding)|GO:0005634(nucleus)|GO:0006309(DNA fragmentation involved in apoptotic nuclear change)|GO:0006917(induction of apoptosis)|GO:0016481(negative regulation of transcription)|GO:0019101(female somatic sex determination)|GO:0030331(estrogen receptor binding)|GO:0031624(ubiquitin conjugating enzyme binding)|GO:0042703(menstruation)|GO:0043028(caspase regulator activity)|GO:0043065(positive regulation of apoptosis)|GO:0043280(positive regulation of caspase activity)|GO:0043565(sequence-specific DNA binding)|GO:0045893(positive regulation of transcription, DNA-dependent)|GO:0045944(positive regulation of transcription from RNA polymerase II promoter)|GO:0048048(embryonic eye morphogenesis)|GO:0060014(granulosa cell differentiation)"
GAGCTCGCCATGATGCATTGCTCTTACTGGGACCACGACAGCAAGACCGGCGCGCTGCAT
A_73_100017
A_73_100017
FALSE
XM_590757 539996
SEMA3B
"sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B"
Bt.2013
ENSBTAT00000013382
ens|ENSBTAT00000013382|tc|TC367437|tc|TC337460
chr22:50993569-50993510
"U73167 semaphorin V {Homo sapiens} (exp=0; wgp=1; cg=0), partial (23%) [TC367437]"
CAGCATCTTCCAAGGTTCTGCCGTGTGCGTGTACAGCATGAATGATGTACGCCGGGCCTT
A_73_100019
A_73_100019
FALSE
NM_001015545 NM_001015545 508378
LGP2
RNA helicase LGP2
Bt.27564
ref|NM_001015545|gb|BT020952|gb|BC146128|tc|TC348046
unmapped
"Bos taurus RNA helicase LGP2 (LGP2), mRNA [NM_001015545]"
GO:0003677(DNA binding)|GO:0004386(helicase activity)|GO:0005524(ATP binding)|GO:0016787(hydrolase activity)
CCAAGGCCACTTCTATTTTTTGAGATTCTCCATAAATTAAAAATAAAGAAGTGGAAAACG
A_73_100021
A_73_100021
FALSE
NM_001046333 NM_001046333 532713
CAMK2D
calcium/calmodulin-dependent protein kinase II delta
Bt.58299
ENSBTAT00000039835
ref|NM_001046333|ens|ENSBTAT00000039835|ens|ENSBTAT00000026764|gb|BC105459
chr6:13223059-13223118
"Bos taurus calcium/calmodulin-dependent protein kinase II delta (CAMK2D), mRNA [NM_001046333]"
GO:0000166(nucleotide binding)|GO:0004683(calmodulin-dependent protein kinase activity)|GO:0005516(calmodulin binding)|GO:0005524(ATP binding)|GO:0006468(protein amino acid phosphorylation)|GO:0016740(transferase activity)
CATGGTATCTTCATCAACCTTATTTTAACAGCAGTAATTCACAATCCTCAGAAGCCTATT
A_73_100023
A_73_100023
FALSE
XM_613774 XM_613774 Bt.37487
tc|TC340929|tc|TC332186|tc|TC319693|ref|XM_613774
chr11:76078735-76078794
"MMY15742 dystrobrevin B (mDTN-B) {Mus musculus} (exp=-1; wgp=0; cg=0), partial (35%) [TC340929]"
GCACAGTCCTGCATGAACTAGCATCTTCATCACTCTCCTCCGGGCATGGTCTCATCTCTG
A_73_100025
A_73_100025
FALSE
AF515672 Bt.89599
gb|AF515672|gb|AF411240|tc|TC302404|tc|TC389918
unmapped
"Bos taurus immunoglobulin delta heavy chain membrane bound form (IgD) mRNA, partial cds. [AF515672]"
TGTGGTCAGCCACGAGGCCTCCCGGACGCTCCTCAATGGCAGCTGCAGCCTGGACACTGG
A_73_100026
A_73_100026
FALSE
NM_001046009 NM_001046009 508703
PRAF2
"PRA1 domain family, member 2"
Bt.22508
ENSBTAT00000003318
ref|NM_001046009|ens|ENSBTAT00000003318|gb|BC112850|tc|TC304639
chrX:55368776-55368835
"Bos taurus PRA1 domain family, member 2 (PRAF2), mRNA [NM_001046009]"
GO:0005768(endosome)|GO:0010008(endosome membrane)|GO:0015031(protein transport)|GO:0016020(membrane)|GO:0016021(integral to membrane)
CCCTGACCAGGAATGGGGCATATATAGCAGTATTGCTGCAACAATAAAGGCTGTTGCATT
A_73_100029
A_73_100029
FALSE
NM_001040473 NM_001040473 281183
GART
"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase"
Bt.11270
ENSBTAT00000012108
ref|NM_001040473|ens|ENSBTAT00000012108|gb|AJ783708|gb|AJ783707
chr1:1085659-1086207
"Bos taurus phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase (GART), mRNA [NM_001040473]"
GO:0000166(nucleotide binding)|GO:0004637(phosphoribosylamine-glycine ligase activity)|GO:0004641(phosphoribosylformylglycinamidine cyclo-ligase activity)|GO:0004644(phosphoribosylglycinamide formyltransferase activity)|GO:0005515(protein binding)|GO:0005524(ATP binding)|GO:0005737(cytoplasm)|GO:0006164(purine nucleotide biosynthetic process)|GO:0006189('de novo' IMP biosynthetic process)|GO:0008168(methyltransferase activity)|GO:0009058(biosynthetic process)|GO:0009113(purine base biosynthetic process)|GO:0016740(transferase activity)|GO:0016874(ligase activity)|GO:0046872(metal ion binding)
AGGTGTCCTCTATGCTGGTATAATGCTGACCAAGAACGGCCCCAAAGTTCTGGAATTTAA
A_73_100030
A_73_100030
FALSE
NM_001103313 NM_001103313 100125233
STAU2
"staufen, RNA binding protein, homolog 2 (Drosophila)"
Bt.14280
ENSBTAT00000046802
ref|NM_001103313|ens|ENSBTAT00000046802|gb|BC126557|gb|BC149987
unmapped
"Bos taurus staufen, RNA binding protein, homolog 2 (Drosophila) (STAU2), mRNA [NM_001103313]"
TAAGCTGCTCACTGTTTGCATCCAAAGTGTTCTTTGATAACTGCCTCTGCACTTGGGTCA
A_73_100034
A_73_100034
FALSE
NM_001101225 NM_001101225 613730
POLE4
"polymerase (DNA-directed), epsilon 4 (p12 subunit)"
Bt.9810
ENSBTAT00000047798
ref|NM_001101225|ens|ENSBTAT00000047798|gb|BC149592|gb|DV778772
chr11:9937098-9937157
"Bos taurus polymerase (DNA-directed), epsilon 4 (p12 subunit) (POLE4), mRNA [NM_001101225]"
GO:0003887(DNA-directed DNA polymerase activity)|GO:0005515(protein binding)|GO:0005622(intracellular)|GO:0005634(nucleus)|GO:0016740(transferase activity)|GO:0016779(nucleotidyltransferase activity)|GO:0043565(sequence-specific DNA binding)
TCTGGCCTGGATGCAGCTGCTTGTGGTAGAAATATAGAAAATGGTTTGTGTAGGTTGGTT
A_73_100035
A_73_100035
FALSE
NM_001102144 NM_001102144 532402
ANKRD9
ankyrin repeat domain 9
Bt.88457
ref|NM_001102144|gb|BC151561|tc|TC371063
chr21:67368802-67368743
"Bos taurus ankyrin repeat domain 9 (ANKRD9), mRNA [NM_001102144]"
CCTGGCCGCTTCCCCGAGGCCCTGGACGAGCTGCCGCTGCCGCCCTTCCTGCAGCCACTG
A_73_100036
A_73_100036
FALSE
NM_001098464 NM_001098464 539441
SARG
chromosome 1 open reading frame 116 ortholog
Bt.27441
ENSBTAT00000024149
ref|NM_001098464|ens|ENSBTAT00000024149|gb|BC140587|tc|TC341369
chr16:3850599-3850558
"Bos taurus chromosome 1 open reading frame 116 ortholog (SARG), mRNA [NM_001098464]"
GO:0004872(receptor activity)|GO:0005737(cytoplasm)
AGTACCAGAGCCAAAAAAGAGTGACTCCATTCAGCTCAGCTCATCCACCTGGGCCCCAAA
A_73_100037
A_73_100037
FALSE
NM_173969 NM_173969 280955
VIM
vimentin
Bt.102950
ENSBTAT00000024572
ref|NM_173969|ens|ENSBTAT00000024572|gb|BC118269|gb|L13263
chr13:31483813-31483872
"Bos taurus vimentin (VIM), mRNA [NM_173969]"
GO:0005200(structural constituent of cytoskeleton)|GO:0005737(cytoplasm)|GO:0005856(cytoskeleton)|GO:0005882(intermediate filament)|GO:0005886(plasma membrane)|GO:0008022(protein C-terminus binding)|GO:0008150(biological_process)|GO:0031252(cell leading edge)|GO:0045103(intermediate filament-based process)
AAATCCATATCTTAAAGAAACAGCTTTCAAGTGCCTTTCTGCAGTTTTTTCAGGAGCGCA
A_73_100038
A_73_100038
FALSE
tc|TC380901
chr22:51899244-51899303
"HUMIMP inosine-5'-monophosphate dehydrogenase {Homo sapiens} (exp=-1; wgp=0; cg=0) , partial (28%) [TC380901]"
AGCCTCCATTCGTAAGTGGCAACCCTGTCTACTCCTCTGTCCTTGGGATAGAGGTCTCTC
A_73_100038
43713 19331 Kbytes .Supplementary data files not provided
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