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Status
Public on May 22, 2007
Title
MPIMG Homo sapiens 36k_arrayCGH8
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
MPIMG_BERLIN
Manufacture protocol
The submegabase resolution whole genome tiling path BAC array consists of the human 32k BAC Re-Array Set* (BACPAC Resources Center, DNA kindly provided by Nigel Carter, Wellcome Trust Sanger Centre) and a set if subtelomeric clones (assembled by members of the COSTB19 Action: Molecular cytogenetics of solid tumours). Protocols for the isolation of DNA (1 Mb Sanger set and subtelomeric set) and the amplification of insert DNA by linker adapter PCR are described in detail at the Molecular Cytogenetics website of MPG. Amplicons were ethanol precipitated, dissolved in 3XSSC/1,5M betaine and spotted on epoxy-coated slides (NUNC, Wiesbaden, FRG) by means of a modified Qarray (originally from Genetix, new Milton, U.K.) and Pointech (Gibbon,MN) Tungston PTL 2500 slit pins. Each BAC is represented by a single spot on the array. * due to recurrent abnormal ratios in a series of control hybridisation encompassing 30 tumors, clones from plate HGP DNA RP C 12_2 were excluded from further analysis.
Support
glass
Coating
other
Submission date
Apr 23, 2007
Last update date
May 27, 2007
Contact name
Reinhard Ullmann
E-mail(s)
[email protected] Phone
00493084131251
Organization name
MPIMG
Department
Human Molecular Genetics
Lab
Molecular Cytogenetics
Street address
Ihnestr.73
City
Berlin
ZIP/Postal code
14195
Country
Germany
Samples (179)
GSM183680 , GSM183681 , GSM183682 , GSM183683 , GSM183684 , GSM183685
GSM183686 ,
GSM183687 ,
GSM183688 ,
GSM183689 ,
GSM183690 ,
GSM183691 ,
GSM183692 ,
GSM191070 ,
GSM191071 ,
GSM191072 ,
GSM191073 ,
GSM191074 ,
GSM194064 ,
GSM194065 ,
GSM194066 ,
GSM194067 ,
GSM194068 ,
GSM195184 ,
GSM195185 ,
GSM195186 ,
GSM195187 ,
GSM195188 ,
GSM195189 ,
GSM195190 ,
GSM214160 ,
GSM214161 ,
GSM214162 ,
GSM214163 ,
GSM214164 ,
GSM214165 ,
GSM255754 ,
GSM255755 ,
GSM368465 ,
GSM368466 ,
GSM368475 ,
GSM368476 ,
GSM368477 ,
GSM368478 ,
GSM368479 ,
GSM368480 ,
GSM368481 ,
GSM368482 ,
GSM368483 ,
GSM453685 ,
GSM453686 ,
GSM453687 ,
GSM453688 ,
GSM453689 ,
GSM453690 ,
GSM453691 ,
GSM453692 ,
GSM453693 ,
GSM453694 ,
GSM453695 ,
GSM453696 ,
GSM453697 ,
GSM453698 ,
GSM453699 ,
GSM453700 ,
GSM453701 ,
GSM453702 ,
GSM453703 ,
GSM453704 ,
GSM453705 ,
GSM453706 ,
GSM453707 ,
GSM453708 ,
GSM453709 ,
GSM453710 ,
GSM453711 ,
GSM453712 ,
GSM453713 ,
GSM453714 ,
GSM453715 ,
GSM453716 ,
GSM453717 ,
GSM453718 ,
GSM453719 ,
GSM453721 ,
GSM453722 ,
GSM453723 ,
GSM453724 ,
GSM453725 ,
GSM453726 ,
GSM453735 ,
GSM453736 ,
GSM453737 ,
GSM453738 ,
GSM453739 ,
GSM453740 ,
GSM453741 ,
GSM453742 ,
GSM453743 ,
GSM453744 ,
GSM453745 ,
GSM453746 ,
GSM453747 ,
GSM453748 ,
GSM453749 ,
GSM453750 ,
GSM453751 ,
GSM453752 ,
GSM453753 ,
GSM453754 ,
GSM454617 ,
GSM454646 ,
GSM454647 ,
GSM454648 ,
GSM454649 ,
GSM454650 ,
GSM454651 ,
GSM454652 ,
GSM454653 ,
GSM454654 ,
GSM454655 ,
GSM454659 ,
GSM454660 ,
GSM454661 ,
GSM454662 ,
GSM461432 ,
GSM461433 ,
GSM461434 ,
GSM461435 ,
GSM461436 ,
GSM461437 ,
GSM461438 ,
GSM461439 ,
GSM461440 ,
GSM461441 ,
GSM461442 ,
GSM461443 ,
GSM461444 ,
GSM461445 ,
GSM461446 ,
GSM461447 ,
GSM461448 ,
GSM461449 ,
GSM461450 ,
GSM469977 ,
GSM469978 ,
GSM469979 ,
GSM469980 ,
GSM469981 ,
GSM469982 ,
GSM469983 ,
GSM469984 ,
GSM469985 ,
GSM469986 ,
GSM470379 ,
GSM470380 ,
GSM470381 ,
GSM470382 ,
GSM507518 ,
GSM507519 ,
GSM507520 ,
GSM507521 ,
GSM507522 ,
GSM507523 ,
GSM507524 ,
GSM507525 ,
GSM507526 ,
GSM507527 ,
GSM509058 ,
GSM509059 ,
GSM509060 ,
GSM729842 ,
GSM729843 ,
GSM729844 ,
GSM729845 ,
GSM729846 ,
GSM729847 ,
GSM729848 ,
GSM729849 Series (13)
GSE6225 16p13 aberrations predispose to autism and MR
GSE7527 Array CGH in congenital heart disease
GSE7886 A defect in the ionotropic glutamate receptor 6 gene (GRIK2) causes autosomal recessive mental retardation
GSE7950 Identification of Candidate Genes for Sporadic Amyotrophic Lateral Sclerosis by Array Comparative Genomic Hybridisation
GSE8606 Comparative genomic hybridization suggests a role for NRXN1 and APBA2 in schizophrenia
GSE10115 Mapping translocation breakpoints by next-generation sequencing
GSE14803 Positioning of Necrotic Lobular Intraepithelial Neoplasias within the sequence of breast carcinoma progression
GSE18152 Screening for chromosomal aberrations by array CGH in 74 patients with congenital hypothyroidism
GSE18187 Array comparative genomic hybridization analysis of flat epithelial atypia (DIN1a) and lobular intraepithelial neoplasia
GSE19000 Comparative genomic hybridization of 20 patients with Sézary syndrome
GSE21731 Genomic loss of the putative tumor suppressor gene E2A promotes cutaneous T-cell lymphoma in human
GSE24876 Acute high dose X-irradiation-induced genomic changes in a lung tumor cell line
GSE63013 The long isoform of RUNX3 acts as a tumor supressor in human T-cell lymphoma
Data table header descriptions ID Internal_Name clone name for internal use
Name original library name
Block block
Row row
Col column
Chromosom chromosome
Chromosom_start clone startposition (UCSC Maz 2004(Hg17),NCBI Build 35)
Chromosom_end clone end position (UCSC Maz 2004(Hg17),NCBI Build 35)
GB_RANGE NCBI Build 35 chr accession [start..end]
CLONE_ID BAC Clone
SPOT_ID spot identifier
Data table ID Internal_Name Name Block Row Col Chromosom Chromosom_start Chromosom_end GB_RANGE CLONE_ID SPOT_ID 1_1_1_bK1444N24
bK1444N24
bK1444N24
1
1
1
--
--
--
bK1444N24
1_1_2_Buffer_PCR
Buffer_PCR
Buffer_PCR
1
1
2
--
--
--
--Buffer_PCR
1_1_3_397B22
397B22
397B22
1
1
3
--
--
--
397B22
1_1_4_Buffer_PCR
Buffer_PCR
Buffer_PCR
1
1
4
--
--
--
--Buffer_PCR
1_1_5_Buffer_PCR
Buffer_PCR
Buffer_PCR
1
1
5
--
--
--
--Buffer_PCR
1_1_6_F0488J12
F0488J12
RP13-488J12
1
1
6
chr6
39981664
40077232
NC_000006.9[39981664..40077232]
RP13-488J12 1_1_7_N0413M21
N0413M21
RP11-413M21
1
1
7
chr2
49722275
49893627
NC_000002.9[49722275..49893627]
RP11-413M21 1_1_8_D2542F24
D2542F24
CTD-2542F24
1
1
8
chrX
142934882
143104925
NC_000023.8[142934882..143104925]
CTD-2542F24 1_1_9_N0137H06
N0137H06
RP11-137H6
1
1
9
chr7
20092898
20246525
NC_000007.11[20092898..20246525]
RP11-137H6 1_1_10_N0673B19
N0673B19
RP11-673B19
1
1
10
chr1
170769040
170971853
NC_000001.8[170769040..170971853]
RP11-673B19 1_1_11_N0090E12(del)
N0090E12(del)
N0090E12(del)
1
1
11
--
--
--
N0090E12(del)
1_1_12_N0097G03
N0097G03
RP11-97G3
1
1
12
chr5
169019435
169186042
NC_000005.8[169019435..169186042]
RP11-97G3 1_1_13_N1030C19
N1030C19
RP11-1030C19
1
1
13
chr15
67512352
67703569
NC_000015.8[67512352..67703569]
RP11-1030C19 1_1_14_N0345M21
N0345M21
RP11-345M21
1
1
14
chr14
34291680
34493927
NC_000014.7[34291680..34493927]
RP11-345M21 1_1_15_N0281A03
N0281A03
RP11-281A3
1
1
15
chr15
94793749
94982390
NC_000015.8[94793749..94982390]
RP11-281A3 1_1_16_N0771D21
N0771D21
RP11-771D21
1
1
16
chr6
52037630
52237235
NC_000006.9[52037630..52237235]
RP11-771D21 1_1_17_N0504D21
N0504D21
RP11-504D21
1
1
17
chr11
41145833
41340204
NC_000011.8[41145833..41340204]
RP11-504D21 1_1_18_N0490A23
N0490A23
RP11-490A23
1
1
18
chr14
19164830
19301441
NC_000014.7[19164830..19301441]
RP11-490A23 1_1_19_M2112G04
M2112G04
CTD-2112G4
1
1
19
chr11
26048566
26161137
NC_000011.8[26048566..26161137]
CTD-2112G4 1_1_20_N0282F14
N0282F14
RP11-282F14
1
1
20
chr3
176949096
176992855
NC_000003.9[176949096..176992855]
RP11-282F14
41760 4365 Kbytes .Supplementary data files not provided
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