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Status |
Public on Mar 30, 2006 |
Title |
Gene expression signatures for predicting prognosis of squamous cell lung carcinomas |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by array
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Summary |
Gene signatures were derived to separate high risk patients from low risk ones.. Keywords: prognosis analysis
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Overall design |
130 samples from 129 patients
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Citation(s) |
16885343 |
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Submission date |
Mar 29, 2006 |
Last update date |
Aug 10, 2018 |
Contact name |
Jack Yu |
E-mail(s) |
[email protected]
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Phone |
858-320-3362
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Fax |
858-784-3182
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Organization name |
Veridex, LLC
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Street address |
3210 Merryfield Row
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City |
San Diego |
State/province |
CA |
ZIP/Postal code |
92121 |
Country |
USA |
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Platforms (1) |
GPL96 |
[HG-U133A] Affymetrix Human Genome U133A Array |
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Samples (130)
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Relations |
BioProject |
PRJNA94409 |
Clinical Data header descriptions |
RNA array SCC ID |
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Histology |
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Operation date |
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Last visit time |
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Date of death |
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Survival time (mo) |
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Other disease |
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STAGE |
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T |
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N |
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M |
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differentiation |
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AGE |
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SEX |
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RACE |
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SMOKING HX |
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Data table |
RNA array SCC ID |
Histology |
Operation date |
Last visit time |
Date of death |
Survival time (mo) |
Other disease |
STAGE |
T |
N |
M |
differentiation |
AGE |
SEX |
RACE |
SMOKING HX |
LS-1 |
SCC |
12/2/1991 |
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2/25/1993 |
15.0 |
unknown |
IIb |
3 |
0 |
0 |
mod-poor |
75 |
M |
w |
40 pk/yr
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LS-10 |
SCC |
9/29/1992 |
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6/20/1993 |
9.7 |
hyperthyroidism |
Ib |
2 |
0 |
0 |
poor |
61 |
F |
w |
Non-smoker
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LS-100 |
SCC |
6/11/2001 |
2/10/2003 |
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20.3 |
diabetes |
Ib |
2 |
0 |
0 |
mod |
72 |
M |
w |
2pk/day - 25 yrs
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LS-101 |
SCC |
4/30/2001 |
3/26/2004 |
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35.4 |
unknown |
IIb |
2 |
1 |
0 |
mod |
75 |
M |
w |
unknown
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LS-102 |
SCC |
9/12/2001 |
2/17/2004 |
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29.6 |
Chronic obstructive pulmonary disease |
Ib |
2 |
0 |
0 |
mod |
76 |
F |
w |
1pk/day - 40yrs
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LS-103 |
SCC |
7/27/2001 |
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11/27/2003 |
28.4 |
diabetes, coronary artery disease |
IIb |
2 |
1 |
0 |
well-mod |
58 |
M |
w |
1.5pk/day - 40yrs
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LS-104 |
SCC |
9/17/2001 |
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2/20/2002 |
5.2 |
emphysema |
IIb |
3 |
0 |
0 |
mod |
74 |
M |
o |
1pk/day - 50 yrs
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LS-105 |
SCC |
10/19/2001 |
3/5/2004 |
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28.9 |
emphysema, car accident 1/20/02, COPD |
IIa |
1 |
1 |
0 |
mod |
68 |
M |
w |
3 pk/day- 50 yrs
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LS-106 |
SCC |
12/11/2001 |
3/8/2004 |
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27.3 |
none |
IIIa |
2 |
2 |
0 |
mod |
43 |
F |
w |
Non-smoker
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LS-107 |
SCC |
11/19/2001 |
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9/7/2002 |
9.7 |
Emphysema, COPD |
Ib |
2 |
0 |
0 |
poor |
80 |
F |
w |
1pk/day - 50 yrs
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LS-108 |
SCC |
12/18/2001 |
5/7/2004 |
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29.0 |
Emphysema, Hypercholesterolemia |
Ia |
1 |
0 |
0 |
mod-poor |
73 |
M |
w |
80py
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LS-109 |
SCC |
3/20/2002 |
5/27/2004 |
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26.6 |
Severe COPD, asthma, hypertension |
Ib |
2 |
0 |
0 |
mod |
79 |
F |
w |
used to
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LS-111 |
SCC |
1/18/2002 |
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5/31/2003 |
16.6 |
Hypertension, Alcoholic cirrhosis, car accident '01 |
Ib |
2 |
0 |
0 |
mod |
65 |
M |
w |
1pk/day - 40yrs
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LS-113 |
SCC |
4/8/2002 |
4/1/2004 |
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24.1 |
hypertension, hypothyroidism |
Ib |
2 |
0 |
0 |
mod-poor |
64 |
M |
w |
80 pk/yr-22 yrs
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LS-114 |
SCC |
6/4/2002 |
5/10/2004 |
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23.5 |
Coronary artery disease, angina, hypertension, diabetes |
Ib |
2 |
0 |
0 |
mod-poor |
65 |
M |
w |
1.5 pk/day - 40 yrs
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LS-115 |
SCC |
4/29/2002 |
4/8/2004 |
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23.7 |
hypertension, hyperthyroidism, congestive heart failure, CAD |
Ib |
2 |
0 |
0 |
mod-poor |
73 |
F |
w |
1 pk/day - 35 yrs
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LS-116 |
SCC |
7/22/2002 |
1/23/2003 |
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6.2 |
hypertension |
IIb |
2 |
1 |
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mod-poor |
58 |
F |
w |
1-2 pk/day- 37 yrs
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LS-117 |
SCC |
6/21/1999 |
5/19/2004 |
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59.8 |
hypertension, asthma, |
Ib |
2 |
0 |
0 |
well-mod |
59 |
F |
w |
Non-smoker
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LS-118 |
SCC |
2/11/2000 |
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6/1/2000 |
3.7 |
none |
IIIa |
2 |
2 |
0 |
well-mod |
57 |
M |
w |
1.5pk/yr- 40yrs
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LS-119 |
SCC |
4/6/2000 |
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12/12/2001 |
20.5 |
hypertension |
IIa |
1 |
1 |
0 |
poor |
68 |
F |
w |
2pk/day
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Total number of rows: 130
Table truncated, full table size 12 Kbytes.
Supplementary data files not provided |
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