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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 23, 2018 |
| Title |
Illumina NovaSeq 6000 (Escherichia coli) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Escherichia coli |
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| Submission date |
Jul 23, 2018 |
| Last update date |
Jul 23, 2018 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (1000)
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GSM3302818, GSM3302819, GSM3302820, GSM3302821, GSM3302822, GSM3302823
GSM3302824, GSM3302825, GSM3315798, GSM3315799, GSM3315800, GSM3315801, GSM3315802, GSM3315803, GSM3315804, GSM3315805, GSM3315806, GSM3315807, GSM3315808, GSM3315809, GSM3315810, GSM3315811, GSM3315812, GSM3315813, GSM3608684, GSM3608685, GSM3608686, GSM3608687, GSM3608688, GSM3608689, GSM3722094, GSM3722095, GSM3722096, GSM3722097, GSM3722098, GSM3722099, GSM4221847, GSM4221848, GSM4221849, GSM4221850, GSM4221851, GSM4221852, GSM4221853, GSM4221854, GSM4221855, GSM4221856, GSM4221857, GSM4221858, GSM4870583, GSM4870584, GSM4870585, GSM4870586, GSM4870587, GSM4870588, GSM4870589, GSM4870590, GSM4870591, GSM4870592, GSM4870593, GSM4870594, GSM5027101, GSM5027102, GSM5027103, GSM5027104, GSM5027105, GSM5027106, GSM5027107, GSM5027108, GSM5027109, GSM5027110, GSM5027111, GSM5027112, GSM5027113, GSM5027114, GSM5027115, GSM5027116, GSM5027117, GSM5027118, GSM5027119, GSM5027120, GSM5027121, GSM5106555, GSM5134238, GSM5134239, GSM5134240, GSM5134241, GSM5134242, GSM5134243, GSM5134244, GSM5134245, GSM5134246, GSM5224467, GSM5224468, GSM5290505, GSM5290506, GSM5290507, GSM5290508, GSM5290509, GSM5352014, GSM5352015, GSM5352016, GSM5352017, GSM5352018, GSM5352019, GSM5352020, GSM5352021, GSM5352022, GSM5352023, GSM5352024, GSM5352025, GSM5421552, GSM5421553, GSM5421554, GSM5421555, GSM5421556, GSM5421557, GSM5421558, GSM5421560, GSM5421561, GSM5421562, GSM5421563, GSM5421564, GSM5421565, GSM5421567, GSM5421568, GSM5421569, GSM5421570, GSM5421571, GSM5421572, GSM5421573, GSM5421575, GSM5421576, GSM5421577, GSM5421578, GSM5421579, GSM5421580, GSM5421581, GSM5421583, GSM5421584, GSM5421585, GSM5421586, GSM5421587, GSM5421588, GSM5421589, GSM5421590, GSM5421592, GSM5421593, GSM5421594, GSM5421595, GSM5421596, GSM5421597, GSM5421598, GSM5421600, GSM5421601, GSM5421602, GSM5421603, GSM5421604, GSM5421605, GSM5421606, GSM5421607, GSM5421609, GSM5421610, GSM5421611, GSM5421612, GSM5421613, GSM5421614, GSM5421615, GSM5421617, GSM5421618, GSM5421619, GSM5421620, GSM5421621, GSM5421622, GSM5421623, GSM5421624, GSM5421626, GSM5421627, GSM5421628, GSM5421629, GSM5421630, GSM5421631, GSM5421632, GSM5421633, GSM5421634, GSM5421635, GSM5421636, GSM5421637, GSM5421638, GSM5421639, GSM5421640, GSM5456503, GSM5463706, GSM5463707, GSM5515038, GSM5515039, GSM5515040, GSM5515041, GSM5515042, GSM5515043, GSM5583719, GSM5610210, GSM5610211, GSM5610212, GSM5618599, GSM5618600, GSM5618601, GSM5618602, GSM5618607, GSM5618608, GSM5618609, GSM5618610, GSM5618615, GSM5618616, GSM5618617, GSM5618618, GSM5770585, GSM5770586, GSM5770587, GSM5770588, GSM5770589, GSM5770590, GSM5770591, GSM5770592, GSM5770593, GSM5770594, GSM5770595, GSM5770596, GSM5770597, GSM5770598, GSM5770599, GSM5770600, GSM5770601, GSM5770602, GSM5770603, GSM5770604, GSM5770605, GSM5770606, GSM5770607, GSM5770608, GSM5832424, GSM5832425, GSM5832426, GSM5832427, GSM5832428, GSM5832429, GSM5904624, GSM5904625, GSM5904626, GSM5904627, GSM5904628, GSM5904629, GSM5904630, GSM5904631, GSM5930533, GSM5930534, GSM5930535, GSM5930536, GSM5930537, GSM5930538, GSM5931625, GSM5931626, GSM5931627, GSM5931628, GSM5931629, GSM5931630, GSM5931631, GSM5931632, GSM5931633, GSM5931634, GSM5931635, GSM5931636, GSM5931637, GSM5931638, GSM5931639, GSM5931640, GSM5931641, GSM5931642, GSM5939269, GSM5939270, GSM5939271, GSM5939272, GSM5939273, GSM5939274, GSM5939275, GSM5939276, GSM5939277, GSM5939278, GSM5939279, GSM5939280, GSM5939281, GSM5939282, GSM5939283, GSM5939284, GSM5939285, GSM5939286, GSM5939287, GSM5939288, GSM5939289, GSM5939290, GSM5939291, GSM5939292, GSM5939293, GSM5939294, GSM5939295, GSM5939296, GSM5939297, GSM5939298, GSM5939299, GSM5939300, GSM5939301, GSM5939302, GSM5939303, GSM5939304, GSM5939305, GSM5939306, GSM5939307, GSM5939308, GSM5939309, GSM5939310, GSM5939311, GSM5939312, GSM5939313, GSM5939314, GSM5939315, GSM5939316, GSM5939317, GSM5939318, GSM5939319, GSM5939320, GSM5939321, GSM5939322, GSM5939323, GSM5939324, GSM5939325, GSM5939326, GSM5939327, GSM5939328, GSM5939329, GSM5939330, GSM5939331, GSM5939332, GSM5939333, GSM5939334, GSM5939335, GSM5939336, GSM5939337, GSM5939338, GSM5939339, GSM5939340, GSM5939341, GSM5939342, GSM5939343, GSM5939344, GSM5939345, GSM5939346, GSM5939347, GSM5939348, GSM5939349, GSM5939350, GSM5939351, GSM5939352, GSM5939353, GSM5939354, GSM5939355, GSM5939356, GSM5939357, GSM5939358, GSM5939359, GSM5939360, GSM5939361, GSM5939362, GSM5939363, GSM5939364, GSM5939365, GSM5939366, GSM5939367, GSM5939368, GSM5939369, GSM5939370, GSM5939371, GSM5939372, GSM5939373, GSM5939374, GSM5939375, GSM5939376, GSM5939377, GSM5939378, GSM5939379, GSM5939381, GSM5939382, GSM5939383, GSM5939384, GSM5939385, GSM5939386, GSM5939387, GSM5939388, GSM5939389, GSM5939390, GSM5939391, GSM5939392, GSM5939393, GSM5939394, GSM5939395, GSM5939396, GSM5939397, GSM5939398, GSM5939399, GSM5939400, GSM5939401, GSM5939403, GSM5939405, GSM5939406, GSM5939408, GSM5939409, GSM5939410, GSM5939411, GSM5939412, GSM5939413, GSM5939414, GSM5939415, GSM5939416, GSM5939417, GSM5939418, GSM5939419, GSM5939420, GSM5939421, GSM5939422, GSM5939423, GSM5939424, GSM5939425, GSM5939426, GSM5939427, GSM5939428, GSM5939429, GSM5939430, GSM5939431, GSM5939432, GSM5939433, GSM5939434, GSM5939435, GSM5939436, GSM5939437, GSM5939438, GSM5939439, GSM5939440, GSM5939441, GSM5939442, GSM5939443, GSM5939444, GSM5939445, GSM5939446, GSM5939447, GSM5939448, GSM5939449, GSM5939450, GSM5939452, GSM5939453, GSM5939454, GSM5939456, GSM5939457, GSM5939459, GSM5939460, GSM5939461, GSM5939462, GSM5939463, GSM5939464, GSM5939465, GSM5939466, GSM5939467, GSM5939468, GSM5939469, GSM5939470, GSM5939471, GSM5939472, GSM5939473, GSM5939474, GSM5939475, GSM5939477, GSM5939478, GSM5939479, GSM5939480, GSM5939481, GSM5939482, GSM5939483, GSM5939484, GSM5939485, GSM5939486, GSM5939487, GSM5939488, GSM5939489, GSM5939490, GSM5939491, GSM5939492, GSM5939493, GSM5939494, GSM5939495, GSM5939496, GSM5939497, GSM5939498, GSM5939499...
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| Series (72)
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| GSE117541 |
Genomic Analysis of DNA Double-Strand Break Repair in Escherichia coli |
| GSE117952 |
Genomic Analysis of DNA Double-Strand Break Repair in Escherichia coli (MFA profiles) |
| GSE126584 |
Escherichia coli DH5alpha Transcriptome Sequencing under Wi-Fi radiofrequency radiation |
| GSE129787 |
RNA SEQ STEC FHI96 Type III mod |
| GSE142164 |
Discovery and characterization of the antimetabolite action of thioacetamide-linked 1,2,3-triazoles as disruptors of cysteine biosynthesis in Gram-negative bacteria |
| GSE154226 |
DEtail-seq profiled meiotic DSBs in Saccharomyces cerevisiae |
| GSE155677 |
Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler |
| GSE160284 |
RNAseq analysis of antibacterial mechanism of Cinnamomum camphora essential oil against Escherichia coli |
| GSE164796 |
IPOD-HR, ChIP-seq, RNA-seq of E. coli nucleoid associated protein deletions |
| GSE165151 |
The strategy of a novel way to enhance bacterial motility |
| GSE167518 |
Transcriptional-Regulatory Convergence Across Functional MDD Risk Variants Identified by Massively Parallel Reporter Assays [Expt2] |
| GSE167519 |
Transcriptional-Regulatory Convergence Across Functional MDD Risk Variants Identified by Massively Parallel Reporter Assays |
| GSE168226 |
undetermined |
| GSE171362 |
Apoptolidin family glycomacrolides target leukemia through inhibition of ATP synthase |
| GSE174268 |
Inducible meiotic cDNA libraries for genome-wide studies of gene isoforms |
| GSE175957 |
Exploring Fur regulon in Escherichia coli |
| GSE179607 |
Global analysis of the specificities and targets of endoribonucleases from E. coli toxin-antitoxin systems |
| GSE180237 |
Bacterial droplet-based single-cell RNA-seq reveals antibiotic-associated heterogeneous cellular states |
| GSE180482 |
Bacterial ribosome pause sites surveyed by an integration of ribosome profiling and nascent chain profiling II |
| GSE181969 |
mRNA-seq analysis of the Tat mutant of extra-intestinal pathogenic E. coli |
| GSE183453 |
R-loop landscapes during parental-to-zygotic transition in zebrafish |
| GSE185290 |
Quantitative analysis of transcription start site selection in Saccharomyces cerevisiae reveals control by DNA sequence, RNA Polymerase II activity, and NTP levels |
| GSE185572 |
Ribosome profiling reveals multiple roles of SecA in cotranslational protein export |
| GSE194286 |
Light-activated molecular machines are new mode-of-action, fast-acting broad-spectrum antibacterials that target the membrane |
| GSE196911 |
Improved prediction of bacterial CRISPRi guide efficiency from depletion screens through mixed-effect machine learning and data integration |
| GSE197797 |
Bacteria from gut microbiota associated with diarrheal infections in children promote virulence of Shiga toxin-producing and enteroaggregative Escherichia coli pathotypes. |
| GSE197880 |
Molecular signatures of the Eagle effect induced by the artificial siderophore conjugate LP-600 in E. coli |
| GSE198120 |
High throughput analysis of binding of E. coli Lrp mutants |
| GSE203540 |
Iron availability enhances the cellular energetics of aerobic Escherichia coli cultures by activating anaerobic respiratory chains |
| GSE206608 |
Genome-wide mapping of fluoroquinolone-induced gyrase cleavage sites displays drug specific effects that correlate with bacterial persistence |
| GSE206609 |
Effect of fluoroquinolone-induced gyrase cleavage sites on gene expression during drug treatment period and recovery period on E. coli |
| GSE206610 |
Fluoroquinolone-induced gyrase cleavage sites |
| GSE209901 |
RNA-DNA interactome of a prokaryotic cell uncovered by proximity ligation |
| GSE211073 |
Pairwise multiplex CRISPR/Cas9 screen of mitophagy receptors in acute myeloid leukemia |
| GSE213676 |
RNA-seq analysis of the effect of overexpression of DsrA at 42°C on the transcriptome of E. coli wild-type and ∆dps strains |
| GSE213876 |
Sequencing of N6-methyl-deoxyadenosine at single-base resolution across the mammalian genome |
| GSE219068 |
mDRIP-seq: a high-throughput method for R-loop mapping and quantitative assessment |
| GSE219069 |
ssDRIP-seq: a high-throughput method for R-loop mapping and quantitative assessment |
| GSE219071 |
mDRIP-seq is a high-throughput method for quantitative R-loop landscape profiling |
| GSE223483 |
The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets |
| GSE225335 |
Enhanced genome-wide knockout screens in bacteria with CRISPR base editors |
| GSE225626 |
Highly-conserved regulatory activity of the ANR family in the virulence of diarrheagenic bacteria through interaction with Master and Global regulators |
| GSE225782 |
Effect of Escherichia coli B2 on gene expression before and after citric acid-induced antibiotic tolerance |
| GSE226031 |
Bacterial Elimination via Cell Membrane Penetration by Violet Phosphorene Peripheral Sub-Nanoneedles Combined with Oxidative Stress |
| GSE226409 |
Effect of Escherichia coli O157: H7 on gene expression before and after citric acid-induced antibiotic tolerance |
| GSE228373 |
Epigenetic-based regulation of transcriptome in Escherichia coli adaptive antibiotic resistance |
| GSE230757 |
Nascent elongating transcript sequencing (NET-seq) with SI3 domain-deleted Escherichia coli reveals different pause profiles from wildtype |
| GSE233555 |
Calibrated ribosome profiling assesses the dynamics of ribosomal flux on transcripts |
| GSE233657 |
Robust Host Engineering: Enhancing Escherichia coli´s Abiotic Stress Resistance through Ornithine Lipid Membrane Modification |
| GSE233667 |
Modifications in the T arm of tRNA globally determine tRNA function and cellular fitness |
| GSE234254 |
RNA polymerase stalling-derived genome instability underlies ribosomal antibiotic efficacy and resistance evolution |
| GSE240651 |
A cell-free pipeline for recreating methylation patterns radically enhances DNA transformation in bacteria |
| GSE241353 |
Active learning of enhancer and silencer regulatory grammar in photoreceptors |
| GSE244178 |
Adenine effect on Enterohemorraghic E.coli |
| GSE248664 |
Structural stability based deep sequencing of 5 protein targets |
| GSE252427 |
Histone N-tails modulate sequence-specific positioning of nucleosomes |
| GSE253191 |
Dual Barcode is Essential for the Specificity of DSB Repair Capture |
| GSE254392 |
Engineering spacer specificity of the Cre/loxP system |
| GSE255663 |
Plasmid-encoded insertion sequences promote rapid adaptation in clinical enterobacteria |
| GSE264731 |
Transcriptome analysis of Escherichia coli TO114 under salt stress |
| GSE267245 |
RNAP stalling-derived genome instability underlies ribosomal antibiotics efficacy and resistance evolution (ChIP-seq data) |
| GSE267550 |
RNA-guided RNA silencing by an 1 Asgard archaeal Argonaute |
| GSE269471 |
Virulence regulates and boosts CRISPR-Cas9 immunity in Group B Streptococcus [CrispRseq] |
| GSE269473 |
Virulence regulates and boosts CRISPR-Cas9 immunity in Group B Streptococcus. |
| GSE269852 |
Plasmid-chromosome transcriptional crosstalk in multidrug resistant clinical enterobacteria |
| GSE273456 |
Comprehensive Assessment of Initial Adaptation of ESBL Positive ST131 E. coli to Carbapenem Exposure |
| GSE274311 |
L-rhamnose globally changes the transcriptome of planktonic and biofilm Escherichia coli cells and modulates biofilm growth |
| GSE275581 |
Probing the orthogonality and robustness of the mammalian RNA-binding protein Musashi-1 in Escherichia coli [Ribo-seq] |
| GSE275582 |
Probing the orthogonality and robustness of the mammalian RNA-binding protein Musashi-1 in Escherichia coli [RNA-seq] |
| GSE276399 |
Deep mutational scanning and mobility-based selection for 6 RNA targets |
| GSE278616 |
RNA-seq analysis of BL21 (DE3) cells for AcK biosynthesis |
| GSE279187 |
TEAL-seq (Targeted Expression Analysis Sequencing) of S. aureus and S. epidermidis in TSB and skin-relevent conditions |
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| Supplementary data files not provided |
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