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Status
Public on Jun 13, 2005
Title
Yeast Splicing Chip v5.0
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Saccharomyces cerevisiae
Description
This is an oligonucleotide microarray designed to measure splicing in yeast. Each intron containing gene has 3 features (Splice Junction, Intron, Exon2). The SJ oligo symmetrically spans the splice junction with 20nt on each side. The SJ, Int, and Ex2 oligos are custom designed 40-mers. The array also contains about 1000 70-mers from the Operon Yeast Genome Set. All of the SJ, Int, and Ex2 oligos are printed 4 times, the Operon 70-mers are printed only once.
Contributor(s)
Clark TA , Sugnet CW , Ares M , Burckin TA , Nagel RJ Submission date
Jul 22, 2004
Last update date
Jun 16, 2005
Contact name
Todd A Burckin
E-mail(s)
[email protected] Phone
831 459-5245
Fax
831 459-3139
Organization name
University of California Santa Cruz
Department
Molecular, Cell, & Developmental Biology
Lab
Hartzog Lab
Street address
1156 High Street
City
Santa Cruz
State/province
CA
ZIP/Postal code
95062
Country
USA
Samples (34)
GSM27230 , GSM27231 , GSM27232 , GSM27233 , GSM27234 , GSM27235
GSM27236 ,
GSM27237 ,
GSM27238 ,
GSM27239 ,
GSM27240 ,
GSM27241 ,
GSM27242 ,
GSM27243 ,
GSM27244 ,
GSM27245 ,
GSM27246 ,
GSM27247 ,
GSM27248 ,
GSM27249 ,
GSM27250 ,
GSM27251 ,
GSM28853 ,
GSM28854 ,
GSM28855 ,
GSM28856 ,
GSM28857 ,
GSM28858 ,
GSM28859 ,
GSM28860 ,
GSM28993 ,
GSM28994 ,
GSM29035 ,
GSM29036 Series (2)
GSE1610 Analyzing the role of transcription elongation factors Spt4-5 in splicing
GSE1684 Exploring functional relationships between components of the gene expression machinery
Data table header descriptions ID
Name Feature Name
ORF Yeast ORF
Type Feature Type
Block Block that the spot was printed in
Row Row within the block
Column Column within the block
SPOT_ID
Data table ID Name ORF Type Block Row Column SPOT_ID 6
18s_rRNA
rRNA
1
1
6
18s_rRNA
366
18s_rRNA
rRNA
2
1
6
18s_rRNA
726
18s_rRNA
rRNA
3
1
6
18s_rRNA
1086
18s_rRNA
rRNA
4
1
6
18s_rRNA
1446
18s_rRNA
rRNA
5
1
6
18s_rRNA
1806
18s_rRNA
rRNA
6
1
6
18s_rRNA
2166
18s_rRNA
rRNA
7
1
6
18s_rRNA
2526
18s_rRNA
rRNA
8
1
6
18s_rRNA
3235
18s_rRNA
rRNA
9
15
19
18s_rRNA
3595
18s_rRNA
rRNA
10
15
19
18s_rRNA
3955
18s_rRNA
rRNA
11
15
19
18s_rRNA
4315
18s_rRNA
rRNA
12
15
19
18s_rRNA
4675
18s_rRNA
rRNA
13
15
19
18s_rRNA
5035
18s_rRNA
rRNA
14
15
19
18s_rRNA
5395
18s_rRNA
rRNA
15
15
19
18s_rRNA
5755
18s_rRNA
rRNA
16
15
19
18s_rRNA
7
25s_rRNA
rRNA
1
1
7
25s_rRNA
367
25s_rRNA
rRNA
2
1
7
25s_rRNA
727
25s_rRNA
rRNA
3
1
7
25s_rRNA
1087
25s_rRNA
rRNA
4
1
7
25s_rRNA
5760 202 Kbytes .Supplementary data files not provided
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